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Methods of biomedical optical imaging: from subcellular structures to tissues and organs


Federal Research Center A.V. Gaponov-Grekhov Institute of Applied Physics of the Russian Academy of Sciences, ul. Ulyanova 46, Nizhny Novgorod, 603000, Russian Federation

Optical bioimaging methods have a wide range of applications in life science, most notably including: the molecular resolution study of subcellular structures, the small animal molecular imaging, and the structural and functional clinical diagnostics of tissue layers and organs. In this paper, fluorescent microscopy, fluorescent macroscopy, optical coherence tomography, optoacoustic tomography and optical diffuse spectroscopy and tomography are reviewed from the standpoint of physical fundamentals, applications and progress.

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Fulltext is also available at DOI: 10.3367/UFNe.2015.12.037734
Keywords: optical bioimaging, biophotonics, optical coherence tomography, fluorescent microscopy, optical nanoscopy, optoacoustics, optical diffusion tomography, fluorescent agents, fluorescent proteins, upconversion nanoparticles, STED, STORM
PACS: 42.25.Dd, 42.62.Be, 43.35.Sx, 87.64.−t, 87.64.Cc (all)
DOI: 10.3367/UFNe.2015.12.037734
URL: https://ufn.ru/en/articles/2016/5/g/
000381177800007
2-s2.0-84981312080
2016PhyU...59..487T
Citation: Turchin I V "Methods of biomedical optical imaging: from subcellular structures to tissues and organs" Phys. Usp. 59 487–501 (2016)
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7th, December 2015

Оригинал: Турчин И В «Методы оптической биомедицинской визуализации: от субклеточных структур до тканей и органов» УФН 186 550–567 (2016); DOI: 10.3367/UFNr.2015.12.037734

References (144) ↓ Cited by (28) Similar articles (20)

  1. Tuchin V V (Red.) Opticheskaya Biomeditsinskaya Diagnostika (M.: Fizmatlit, 2007); Tuchin V V (Ed.) Handbook Of Optical Biomedical Diagnostics (Washington, DC: SPIE Press, 2002)
  2. Beard P Interface Focus 1 602 (2011)
  3. Nachabé R et al. Biomed. Opt. Express 2 600 (2011)
  4. Jacques S "Optical absorption of melanin" http://omlc.org/spectra/melanin/pheomelanin.html, (data obrashcheniya: 12.01.2016)
  5. Taroni P et al. J. Biomed. Opt. 12 014021 (2007)
  6. Nachabé R et al. J. Biomed. Opt. 16 087010 (2011)
  7. Isimaru A Rasprostranenie i Rasseyanie Voln v Sluchaino-neodnorodnykh Sredakh (M.: Mir, 1981); Per. s angl. izd., Ishimaru A Wave Propagation And Scattering In Random Media (New York: Academic Press, 1978)
  8. Gorshkov A V, Kirillin M Yu J. Biomed. Opt. 20 085002 (2015)
  9. Krafft C et al. J. Biomed. Opt. 17 040801 (2012)
  10. Tichauer K M et al. Phys. Med. Biol. 60 K239 (2015)
  11. König K J. Microsc. 200 83 (2000)
  12. Ivanov A A, Alfimov M V, Zheltikov A M Usp. Fiz. Nauk 174 743 (2004); Ivanov A A, Alfimov M V, Zheltikov A M Phys. Usp. 47 687 (2004)
  13. Uchugonova A et al. Cell Cycle 10 2017 (2011)
  14. Balu M et al. JAMA Dermatology 151 1068 (2015)
  15. Dimitrow E et al. J. Invest. Dermatol. 129 1752 (2009)
  16. Horton N G et al. Nature Photon. 7 205 (2013)
  17. Hell S, Stelzer E H K Opt. Commun. 93 277 (1992)
  18. Westphal V, Hell S W Phys. Rev. Lett. 94 143903 (2005)
  19. Rust M J, Bates M, Zhuang X Nature Meth. 3 793 (2006)
  20. van de Linde S et al. Nature Protoc. 6 991 (2011)
  21. Gustafsson M G L Proc. Natl. Acad. Sci. USA 102 13081 (2005)
  22. Yamanaka M, Smith N I, Fujita K Microscopy 63 177 (2014)
  23. Sharpe J et al. Science 296 541 (2002)
  24. Huisken J, Stainier D Y R Development 136 1963 (2009)
  25. Huisken J et al. Science 305 1007 (2004)
  26. Dodt H-U et al. Nature Meth. 4 331 (2007)
  27. Morozov A N i dr. Kvantovaya Elektronika 40 842 (2010); Morozov A N et al. Quantum Electron. 40 842 (2010)
  28. Huang D et al. Science 254 1178 (1991)
  29. Sull A C et al. Retina 30 235 (2010)
  30. Regatieri C V et al. Retina 32 563 (2012)
  31. Mowatt G et al. Health Technol. Assess. 18 1 (2014)
  32. Vakoc B J et al. Nature Rev. Cancer 12 363 (2012)
  33. Mahmood U et al. Am. J. Rhinol. 20 155 (2006)
  34. Panteleeva O G i dr. Vestn. Rentgenologii Radiologii (4) 50 (2012)
  35. Davoudi B et al. J. Biomed. Opt. 18 076008 (2013)
  36. Gudmundsdottir I et al. Open Heart 2 e000225 (2015)
  37. Dolin L S et al. Coherent-Domain Optical Methods. Biomedical Diagnostics, Environmental And Material Science (Ed. V V Tuchin) (New York: Kluwer Acad. Publ., 2004) p. 211
  38. Dolin L S Usp. Fiz. Nauk 179 553 (2009); Dolin L S Phys. Usp. 52 519 (2009)
  39. Turchin I V et al. J. Biomed. Opt. 10 064024 (2005)
  40. Feldchtein F I et al. Optics Express 3 257 (1998)
  41. Sergeev A M et al. Opt. Express 1 432 (1997)
  42. Fujimoto J G et al. Neoplasia 2 9 (2000)
  43. Boppart S A et al. Radiology 208 81 (1998)
  44. Shakhov A V et al. J. Surg. Oncol. 77 253 (2001)
  45. Shakhova N M et al. Laser Phys. 12 617 (2002)
  46. De Boer J F et al. IEEE J. Sel. Topics Quantum Electron. 5 1200 (1999)
  47. Matveev L A et al. Opt. Lett. 40 1472 (2015)
  48. Briers J D, Webster S J. Biomed. Opt. 1 174 (1996)
  49. Vilenskii M A i dr. Kvantovaya Elektronika 42 489 (2012); Vilenskii M A et al. Quantum Electron. 42 489 (2012)
  50. Robles F E et al. Nature Photon. 5 744 (2011)
  51. Izatt J A et al. IEEE J. Sel. Topics Quantum Electron. 2 1017 (1996)
  52. Gelikonov V M i dr. Izv. Vuzov. Radiofizika 46 610 (2003); Gelikonov V M et al. Radiophys. Quantum Electron. 46 550 (2003)
  53. Dubois A, Moreau J, Boccara C Opt. Express 16 17082 (2008)
  54. Wang R K et al. J. Opt. Soc. Am. B 18 948 (2001)
  55. Genina E A, Bashkatov A N, Tuchin V V Expert Rev. Med. Devices 7 825 (2010)
  56. Sirotkina M A et al. J. Nanopart. Res. 13 283 (2011)
  57. Kirillin M Yu et al. J. Biomed. Opt. 14 021017 (2009)
  58. Thrane L et al. Opt. Lett. 29 1641 (2004)
  59. Kirillin M et al. J. Biomed. Opt. 17 081413 (2012)
  60. Esenaliev R O, Karabutov A A, Oraevsky A A IEEE J. Sel. Topics Quantum Electron. 5 981 (1999)
  61. Kruger R A et al. Med. Phys. 37 6096 (2010)
  62. Kim C, Favazza C, Wang L V Chem. Rev. 110 2756 (2010)
  63. Razansky D, Buehler A, Ntziachristos V Nature Protoc. 6 1121 (2011)
  64. Jathoul A P et al. Nature Photon. 9 239 (2015)
  65. Subochev P et al. Laser Phys. Lett. 13 025605 (2016)
  66. Rosenthal A, Ntziachristos V, Razansky D Curr. Med. Imaging Rev. 9 318 (2013)
  67. Perekatova V V, Fiks I I, Subochev P V Izv. Vuzov. Radiofizika 57 75 (2014); Perekatova V V, Fiks I I, Subochev P V Radiophys. Quantum Electron. 57 67 (2014)
  68. Neuschmelting V et al. Photoacoustics 4 1 (2015)
  69. Oraevsky A A Biomedical Photonics Handbook (Ed. T Vo-Dinh) (Boca Raton: CRC Press, Taylor and Francis Group, 2015) p. 715
  70. Heijblom M et al. Opt. Express 20 11582 (2012)
  71. Taruttis A et al. PLoS One 7 e30491 (2012)
  72. Yao J, Wang L V Photoacoustics 2 87 (2014)
  73. Subochev P et al. Opt. Lett. 37 4606 (2012)
  74. Subochev P et al. Biomed. Opt. Express 6 631 (2015)
  75. Wurzinger G et al. Biomed. Opt. Express 4 1380 (2013)
  76. Subochev P Opt. Lett. 41 1006 (2016)
  77. Yang J-M et al. Nature Med. 18 1297 (2012)
  78. Subochev P V i dr. Dokl. Ross. Akad. Nauk 454 396 (2014); Subochev P V et al. Dokl. Phys. 59 59 (2014)
  79. Taruttis A, Ntziachristos V Nature Photon. 9 219 (2015)
  80. Menke J Eur. Radiol. 25 2205 (2015)
  81. Mallidi S et al. Theranostics 5 289 (2015)
  82. Zackrisson S, van de Ven S M, Gambhir S S Cancer Res. 74 979 (2014)
  83. Zhou Y et al. J. Biophoton. 8 961 (2015)
  84. Yao J, Wang L V Neurophotonics 1 1877516 (2014)
  85. Allen T J et al. J. Biomed. Opt. 17 061209 (2012)
  86. Hu Z et al. Int. J. Ophthalmol. Eye Res. 03 126 (2015)
  87. Tuchin V V Usp. Fiz. Nauk 167 517 (1997); Tuchin V V Phys. Usp. 40 495 (1997)
  88. Jacques S L Phys. Med. Biol. 58 R37 (2013)
  89. Chung S H et al. Phys. Med. Biol. 53 6713 (2008)
  90. Shah N et al. Disease Markers 19 95 (2004)
  91. Tromberg B J et al. Neoplasia 2 26 (2000)
  92. Patterson M S, Chance B, Wilson B C Appl. Opt. 28 2331 (1989)
  93. Yodh A G, Boas D A Biomedical Photonics Handbook (Ed. T Vo-Dinh) (Boca Raton: CRC Press, 2003), Ch. 21
  94. Bevilacqua F et al. Appl. Opt. 39 6498 (2000)
  95. Zimnyakov D A, Tuchin V V Kvantovaya Elektron. 32 849 (2002); Zimnyakov D A, Tuchin V V Quantum Electron. 32 849 (2002)
  96. Arridge S R Inverse Probl. 15 R41 (1999)
  97. Konovalov A B i dr. Kvantovaya Elektron. 36 1048 (2006); Konovalov A et al. Quantum Electron. 36 1048 (2006)
  98. Tret’yakov E V, Shuvalov V V, Shutov I V Kvantovaya Elektron. 32 941 (2002); Tret’yakov E V, Shuvalov V V, Shutov I V Quantum Electron. 32 941 (2002); Tret’yakov E V, Shuvalov V V, Shutov I V Kvantovaya Elektron. 31 1095 (2001); Tret’yakov E V, Shuvalov V V, Shutov I V Quantum Electron. 31 1095 (2001)
  99. Choe R et al. J. Biomed. Opt. 14 024020 (2009)
  100. Maslennikova A V et al. J. Biophoton. 3 743 (2010)
  101. Boas D A et al. IEEE Signal Process. Mag. 18 57 (2001)
  102. Gibson A P, Hebden J C, Arridge S R Phys. Med. Biol. 50 R1 (2005)
  103. Durduran T et al. Rep. Prog. Phys. 73 076701 (2010)
  104. Eggebrecht A T et al. NeuroImage 61 1120 (2012)
  105. Carpenter C M et al. Opt. Lett. 32 933 (2007)
  106. Godavarty A et al. Breast Cancer Targets Therapy 7 193 (2015)
  107. Taroni P et al. Phys. Med. Biol. 50 2469 (2005)
  108. Orlova A G et al. Laser Phys. Lett. 5 321 (2008)
  109. Thomas D et al. J. Biomed. Opt. 17 071311 (2012)
  110. Ntziachristos V et al. Nature Biotechnol. 23 313 (2005)
  111. Pogue B W et al. Technol. Cancer Res. Treat. 3 15 (2004)
  112. Leblond F et al. J. Photochem. Photobiol. B 98 77 (2010)
  113. Themelis G et al. J. Biomed. Opt. 14 064012 (2009)
  114. Goryainov S A i dr. Voprosy Neirokhirurgii 78 22 (2014); Goriainov S A et al. J. Neurosurgery 78 (2) 21 (2014)
  115. Celli J P et al. Chem. Rev. 110 2795 (2010)
  116. Kleshnin M S et al. Laser Phys. Lett. 12 115602 (2015)
  117. Sheng C et al. Photochem. Photobiol. 83 738 (2007)
  118. Fiks I Int. J. Comput. Meth. 11 1350071 (2014)
  119. Ntziachristos V, Weissleder R Opt. Lett. 26 893 (2001)
  120. Kleshnin M S, Turchin I V Laser Phys. Lett. 10 075601 (2013)
  121. Stuker F, Ripoll J, Rudinin M Pharmaceutics 3 229 (2011)
  122. Corlu A et al. Opt. Express 15 6696 (2007)
  123. Godavarty A et al. Phys. Med. Biol. 48 1701 (2003)
  124. Deliolanis N C et al. J. Biomed. Opt. 13 044008 (2008)
  125. Darne C, Lu Y, Sevick-Muraca E M Phys. Med. Biol. 59 R1 (2014)
  126. Chaudhari A J et al. Med. Biol. 54 4687 (2009)
  127. Freyer M et al. J. Biomed. Opt. 15 036006 (2010)
  128. Nahrendorf M et al. Proc. Natl. Acad. Sci. USA 107 7910 (2010)
  129. Kleshnin M et al. Photon. Lasers Med. 4 85 (2015)
  130. Sun Y, Day R N, Periasamy A Nature Protoc. 6 1324 (2011)
  131. Shcherbo D et al. BMC Biotechnol. 9 24 (2009)
  132. Nothdurft R E et al. J. Biomed. Opt. 14 024004 (2009)
  133. Rusanov A L et al. J. Biophoton. 3 774 (2010)
  134. McGinty J et al. Biomed. Opt. Express 2 1907 (2011)
  135. Filonov G S et al. Nature Biotechnol. 29 757 (2011)
  136. Tsoi K M et al. Accounts Chem. Res. 46 662 (2013)
  137. Xu C T et al. Laser Photon. Rev. 7 663 (2013)
  138. Khaydukov E V et al. Biomed. Opt. Express 5 1952 (2014)
  139. Nyk M et al. Nano Lett. 8 3834 (2008)
  140. Vinegoni C et al. Opt. Lett. 34 2566 (2009)
  141. Xu C T, Axelsson J, Andersson-Engels S Appl. Phys. Lett. 94 251107 (2009)
  142. Grebenik E A et al. J. Biomed. Opt. 18 076004 (2013)
  143. Hong G et al. Nature Photon. 8 723 (2014)
  144. Deliolanis N C et al. Mol. Imag. Biol. 16 652 (2014)
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